Datasets
Smesgene| Publication | Grohme, M.A. et al. (2018) The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms Nature volume 554, pages 56–61. |
| Year | 2018 |
| Number of Scaffolds | 481 |
Smest| Publication | Rozanski, A. et al. (2018) PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity. Nucleic Acids Research |
| Year | 2018 |
| Number of contigs | 31102 |
| Number of predicted interactions | 114497 |
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Gbrna| Publication | Clark, Karen et al. (2015) GenBank. Nucleic acids research vol. 44,D1 (2015): D67-72. |
| Year | 2017 |
| Number of contigs | 4675 |
| Number of predicted interactions | 2513 |
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Dresden| Publication | Brandl H. et al. (2016) PlanMine - a mineable resource of planarian biology and biodiversity . Nucleic Acids Res., 44, D764 –D773. |
| Year | 2016 |
| Number of contigs | 40480 |
| Number of predicted interactions | 61218 |
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Smedgd| Publication | Robb S.M. et al. (2015) SmedGD 2.0: The Schmidtea mediterranea genome database. Genesis, 53, 535–546. |
| Year | 2015 |
| Number of contigs | 32615 |
| Number of predicted interactions | 44945 |
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Consolidated| Publication | Kao D. et al. (2013) The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios. BMC Genomics, 14, 797. |
| Year | 2013 |
| Number of contigs | 23545 |
| Number of predicted interactions | 51521 |
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Graveley| Publication | Resch A.M. et al. (2012) Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea. Plos One, 7, e34447. |
| Year | 2012 |
| Number of contigs | 19503 |
| Number of predicted interactions | 17099 |
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Pearson| Publication | Labbé R.M. et al. (2012) A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals. Stem Cells, 30, 1734 –1745. |
| Year | 2012 |
| Number of contigs | 25889 |
| Number of predicted interactions | 31799 |
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Adamidi| Publication | Adamidi C. et al. (2011) De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res., 21, 1193–1200. |
| Year | 2011 |
| Number of contigs | 18547 |
| Number of predicted interactions | 31637 |
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Illuminaplus| Publication | Sandmann T. et al. (2011) The head-regeneration transcriptome of the planarian Schmidtea mediterranea. Genome Biol., 12 , R76. |
| Year | 2011 |
| Number of contigs | 28926 |
| Number of predicted interactions | 32315 |
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Blythe| Publication | Blythe M.J. et al. (2010) A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology. PLoS One, 5, e15617. |
| Year | 2010 |
| Number of contigs | 24008 |
| Number of predicted interactions | 33229 |
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Smed454| Publication | J.F. Abril et al. (2010) Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea. BMC Genomics |
| Year | 2010 |
| Number of contigs | 46602 |
| Number of predicted interactions | 904610 |
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