Josep F Abril’s Publications

Articles

Since 2021

Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum

J. Pallarès-Albanell, L. Ortega-Flores, T. Senar-Serra, A. Ruiz, J.F. Abril, M. Rosselló , I. Almudi

Corresponding authors

Development, 151(20) :dev203017, 2024. OPEN ACCESS

PubMed Abstract Full Text PDF Suppl.Mat SRA CODE

CAPTVRED: An automated pipeline for viral tracking and discovery from capture-based metagenomics samples.

M. Tarradas-Alemany, S. Martı́nez-Puchol, C. Mejı́as-Molina, M. Itarte, M. Rusiñol, S. Bofill-Mas, J.F. Abril

Bioinformatics Advances, 4(1) :vbae150, 2024. OPEN ACCESS

Abstract Full Text PDF GitHub DATA

Target enrichment metaviromics enables comprehensive surveillance of coronaviruses in environmental and animal samples

S. Martínez-Puchol, M. Tarradas-Alemany, C. Mejías-Molina, M. Itarte, M. Rusiñol, J. Baliellas, N. Abasolo, N. Canela, A. Monastiri, M. López-Roig, J. Serra-Cobo, J.F. Abril, S. Bofill-Mas

Heliyon, 10(11) :e31556, 2024. OPEN ACCESS

Abstract Full Text PDF RAW_DATA

Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum

J. Pallarès-Albanell, L. Ortega-Flores, T. Senar-Serra, A. Ruiz, J.F. Abril, M. Rosselló , I. Almudi

Corresponding authors

bioRxiv, 2024. OPEN ACCESS

Abstract Full Text PDF

Wnt/β-catenin signalling is required for pole-specific chromatin remodeling during planarian regeneration.

E. Pascual-Carreras, M. Marín-Barba, S. Castillo-Lara, P. Coronel-Córdoba, M.S. Magri, G.N. Wheeler, J.L. Gómez-Skarmeta, J.F. Abril, E. Saló , T. Adell

Corresponding authors

Nature Communications, 14(298) :1-16, 2023. OPEN ACCESS

Abstract Full Text PDF SRA GitHub CSM JBrowse

Oxidative Stress Is Associated with Overgrowth in Drosophila l(3)mbt Mutant Imaginal Discs

P. Climent-Cantó , C. Molnar , P. Santabárbara-Ruiz, C. Prieto, J.F. Abril, F. Serras , C. Gonzalez

Contributed equally — Corresponding authors — Joint senior authors

Cells, 11(16) :2542, 2022. OPEN ACCESS

Abstract Full Text PDF Suppl.Mat

Gene Network of Susceptibility to Atypical Femoral Fractures Related to Bisphosphonate Treatment

N. Garcia-Giralt , N. Roca-Ayats, J.F. Abril, N. Martinez-Gil, D Ovejero, S. Castañeda, X. Nogues, D. Grinberg, S. Balcells, R. Rabionet

Genes, 13(1) :146 [1-11], 2022. OPEN ACCESS

PubMed Abstract Full Text PDF Suppl.Mat

Exploring the diversity of coronavirus in sewage during COVID-19 pandemic: Don’t miss the forest for the trees.

S. Martínez-Puchol , M. Itarte, M. Rusiñol, E. Forés, C. Mejías-Molina, C. Andrés, A. Antón, J. Quer, J.F. Abril, R. Girones, S. Bofill-Mas

Science of The Total Environment, 800:149562, 2021. OPEN ACCESS

PubMed Abstract Full Text PDF

Host-dependent editing of SARS-CoV-2 in COVID-19 patients

J. Gregori, M.F. Cortese, M. Piñana, C. Campos, D. Garcia-Cehic, C. Andrés, J.F. Abril, M.G. Codina, A. Rando, J. Esperalba, E. Sulleiro, J. Joseph, N Saubí, S. Colomer-Castell, M.C. Martin, C. Castillo, J.I. Esteban, T. Pumarola, F. Rodriguez-Frias, A. Antón, J. Quer

Emerging Microbes and Infections, 10(1) :1777-1789, 2021. OPEN ACCESS

PubMed Abstract Full Text PDF

Viral populations of SARS-CoV-2 in upper respiratory tract, placenta, amniotic fluid and umbilical cord blood support viral replication in placenta

M. Piñana, J.F. Abril, C. Andrés, A. Silgado, A. Navarro, A. Suy, E. Sulleiro, T. Pumarola, J. Quer , A. Antón

Joint senior authors

Clinical Microbiology and Infection, 27(10) :1542-1544, 2021.

PubMed Full Text PDF

2016-2020

Genomic analyses reveal FoxG as an upstream regulator of wnt1 required for posterior identity specification in planarians

E. Pascual-Carreras, M. Marin-Barba, S. Castillo-Lara, P. Coronel-Cordoba, M.S. Magri, G.N. Wheeler, J.F. Abril, J.L. Gomez-Skarmeta, E. Saló , T. Adell

Joint senior authors

bioRxiv, 2020. OPEN ACCESS

Abstract PDF PlanEXP

The Deubiquitinating Enzyme Ataxin-3 Regulates Ciliogenesis and Phagocytosis in the Retina.

V. Toulis, S. García-Monclús, C. de la Peña-Ramírez, R. Arenas-Galnares, J.F. Abril, S. Todi, N. Khan, A. Garanto, M. do Carmo Costa, G. Marfany

Cell Reports, 33(6) :108360, 2020. OPEN ACCESS

PubMed Abstract Full Text PDF

Characterisation of the sewage virome: comparison of NGS tools and occurrence of significant pathogens

S. Martínez-Puchol , M. Rusiñol, X. Fernández-Cassi, N. Timoneda, M. Itarte, C. Andrés, A. Antón, J.F. Abril, R. Girones, S. Bofill-Mas

Science of The Total Environment, 713:136604, 2020.

PubMed Abstract PDF

Metagenomic analysis of viruses, bacteria and protozoa in irrigation water

M. Rusiñol , S. Martínez-Puchol, N. Timoneda, X. Fernández-Cassi, A. Pérez-Cataluña, A. Fernández-Bravo, L. Moreno-Mesonero, Y. Moreno, J.L. Alonso, M.J. Figueras, J.F. Abril, S. Bofill-Mas, R. Girones

International Journal of Hygiene and Environmental Health, 224:113440, 2020.

PubMed Full Text PDF

PlanExp: intuitive integration of complex RNA-seq datasets with planarian omics resources

S. Castillo-Lara, E. Pascual-Carreras, J.F. Abril

Bioinformatics, 36(6) :1889-1895, 2020.

PubMed Abstract PlanExp

RPGeNet v2.0: expanding the universe of retinal disease gene interactions network

R. Arenas-Galnares , S. Castillo-Lara , V. Toulis, D. Boloc, R. Gonzàlez-Duarte, G. Marfany , J. F. Abril

Contributed equally — Joint senior authors

Database, vol2019:baz120, 2019. OPEN ACCESS

PubMed Full Text PDF Suppl.Material RPGeNet

PPaxe: easy extraction of protein occurrence and interactions from the scientific literature

S. Castillo-Lara, J.F. Abril

Bioinformatics, 35(14) :2523–2524, 2019.

PubMed Abstract PPaxe

Ask1 and Akt act synergistically to promote ROS-dependent regeneration in Drosophila

P. Santabárbara-Ruiz , J. Esteban-Collado , L. Pérez, G. Viola, J.F. Abril, M. Milán, M. Corominas, F. Serras

Contributed equally

PLoS Genetics, 15(1) :1—27, 2019. OPEN ACCESS

PubMed Full Text PDF

Genetic study of atypical femoral fractures using exome sequencing in three affected sisters and three unrelated patients.

N. Roca-Ayats , M. Falcó-Mascaró, N. García-Giralt, M. Cozar, J.F. Abril, J.M. Quesada-Gómez, D. Prieto-Alhambra, X. Nogués, L. Mellibovsky, A. Díez-Pérez, D. Grinberg, S. Balcells

Rev Osteoporos Metab Miner. , 10(4) :108—118, 2018.

PDF

Functional Characterization of a GGPPS Variant Identified in Atypical Femoral Fracture Patients and Delineation of the Role of GGPPS in Bone‐Relevant Cell Types

N. Roca‐Ayats, P. Ying Ng, N. Garcia‐Giralt , M. Falcó‐Mascaró, M. Cozar, J.F. Abril, J.M. Quesada Gómez, D. Prieto‐Alhambra, X. Nogués, J. E. Dunford, R.G. Russell, R. Baron, D. Grinberg, S. Balcells, A. Díez‐Pérez

Journal of Bone and Mineral Research, 33(12) :2091—2098, 2018.

PubMed Abstract

PlanNET: homology-based predicted interactome for multiple planarian transcriptomes

S. Castillo-Lara, J.F. Abril

Bioinformatics, 34(6) :1016—1023, 2018. OPEN ACCESS

PubMed Full Text PDF PlanNET

Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance

X. Fernandez-Cassi , N. Timoneda , S. Martínez-Puchol, M. Rusiñol, J. Rodriguez-Manzano, N. Figuerola, S. Bofill-Mas, JF Abril, R. Girones

Contributed equally

The Science of the Total Environment, 618:870—880, 2018.

PubMed Abstract

SiNoPsis: Single Nucleotide Polymorphisms selection and promoter profiling

D. Boloc, N. Rodríguez, P. Gassó, J.F. Abril, M. Bernardo, A. Lafuente, S. Mas

Bioinformatics, 34(2) :303—305, 2018.

PubMed Abstract Full Text PDF SiNoPsis

Identification of sapovirus GV.2, astrovirus VA3 and novel anelloviruses in serum from patients with acute hepatitis of unknown aetiology

E. Gonzales-Gustavson , N. Timoneda , X. Fernandez-Cassi, A. Caballero, J.F. Abril, M. Buti, F. Rodriguez-Frias, R. Girones

Contributed equally

PLoS One, 12(10) :e0185911, 2017. OPEN ACCESS

PubMed Full Text PDF

A metagenomic assessment of viral contamination on fresh parsley plants irrigated with fecally tainted river water

X. Fernandez-Cassi , N. Timoneda , E. Gonzales-Gustavson, J.F. Abril, S. Bofill-Mas, R. Girones

Contributed equally

International Journal of Food Microbiology, 257:80—90, 2017.

PubMed Full Text

GGPS1 Mutation and Atypical Femoral Fractures with Bisphosphonates

N. Roca-Ayats, S. Balcells, N. Garcia-Giralt, M. Falcó-Mascaró, N. Martínez-Gil, J.F. Abril, R. Urreizti, J. Dopazo, J.M. Quesada-Gómez, X. Nogués, L. Mellibovsky, D. Prieto-Alhambra, J.E. Dunford, M.K. Javaid, R.G. Russell, D. Grinberg, A. Díez-Pérez

The New England Journal of Medicine, 376(18) :1794—1795, 2017.

PubMed Full Text PDF

Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing

M.H. Hjelmsø , M. Hellmér , X. Fernandez-Cassi, N. Timoneda, O. Lukjancenko, M. Seidel, D. Elsässer, F.M. Aarestrup, C. Löfström, S. Bofill-Mas, J.F. Abril, R. Girones, A.C. Schultz

Contributed equally

PLoS ONE, 12(1) :e0170199, 2017. OPEN ACCESS

PubMed Full Text PDF MetaWater

2011-2015

The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata

J.L. Gabre, P. Martinez, H. Nilsson Sköld, O. Ortega-Martinez, J.F. Abril

Marine Genomics, 24(part3) :245—248, 2015.

PubMed Abstract DATA GBrowse

Evidence of viral dissemination and seasonality in a Mediterranean river catchment: Implications for water pollution management

M. Rusiñol, X. Fernandez-Cassi, N. Timoneda, A. Carratalà, J.F. Abril, C. Silvera, M.J. Figueras, E. Gelati, X. Rodó, D. Kay, P. Wyn-Jones, S. Bofill-Mas, R. Girones

Journal of Environmental Management, 159:58—67, 2015.

PubMed Abstract PDF

Distilling a Visual Network of Retinitis Pigmentosa Gene-Protein Interactions to Uncover New Disease Candidates

D. Boloc, S. Castillo-Lara, G. Marfany, R. Gonzàlez-Duarte , J.F. Abril

Joint senior authors — Corresponding authors

PLoS ONE, 10(8) :e0135307, 2015. OPEN ACCESS

PubMed Full Text PDF RPGeNet

Digital Gene Expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea

G. Rodríguez-Esteban, A. González-Sastre , J.I. Rojo-Laguna , E. Saló , J.F. Abril

Contributed equally — Corresponding authors

BMC Genomics, 16:361, 2015. OPEN ACCESS

PubMed Full Text PDF DATA

The nervous system of Xenacoelomorpha: a genomic perspective

E. Perea-Atienza, B. Gavilán, M. Chiodin, J.F. Abril, K.J. Hoff, A.J. Poustka, P. Martinez

Journal of Experimental Biology, 218(pt4) :618—28, 2015. OPEN ACCESS

PubMed Abstract Full Text PDF

Assessment of transcript reconstruction methods for RNA-seq

T. Steijger , J.F. Abril , P.G. Engström , F. Kokocinski , RGASP Consortium, T.J. Hubbard, R. Guigó, J. Harrow, P. Bertone

Contributed equally

Nature Methods, 10(12) :1177-84, 2013. FREE FULL TEXT

PubMed Full Text PDF Suppl Material DATA

Planarians as a Model to Assess In Vivo the Role of Matrix Metalloproteinase Genes during Homeostasis and Regeneration

M.E. Isolani, J.F. Abril, E. Saló, P. Deri, A.M. Bianucci, R. Batistoni

PLoS ONE, 8(2) :e55649, 2013. OPEN ACCESS

PubMed Full Text PDF

High transcriptional complexity of the retinitis pigmentosa CERKL gene in human and mouse

A. Garanto , M. Riera , E. Pomares, J. Permanyer, M. de Castro-Miró, F. Sava, J.F. Abril, G. Marfany, R. Gonzàlez-Duarte

Contributed equally

Invest Ophthalmol Vis Sci (IOVS), 52(8) :5202—14, 2011. FREE FULL TEXT

PubMed Full Text PDF Suppl Material

A proteomics approach to decipher the molecular nature of planarian stem cells

E. Fernández-Taboada , G. Rodríguez-Esteban , E. Saló, J.F. Abril

Contributed equally

BMC Genomics, 12:133, 2011. OPEN ACCESS

PubMed Abstract Full Text PDF DATA

2006-2010

Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

J.F. Abril , F. Cebrià , G. Rodríguez-Esteban, S. Fraguas, T. Horn, B. Calvo, K. Bartscherer, E. Saló

Contributed equally

BMC Genomics, 11:731, 2010. OPEN ACCESS

PubMed Abstract Full Text PDF DATA

Complex selection on 5’ splice sites in intron-rich organisms

M. Irimia , S.W. Roy , D.E. Neafsey, J.F. Abril, J. Garcia-Fernandez, E.V. Koonin

Contributed equally

Genome Research, 19(11) :2021—7, 2009. OPEN ACCESS

PubMed Abstract Full Text PDF

Planarian regeneration: achievements and future directions after 20 years of research

E. Saló , J.F. Abril, T. Adell, F. Cebrià, K. Eckelt, E. Fernández-Taboada, M. Handberg-Thorsager, M. Iglesias, M. D. Molina, G. Rodríguez-Esteban

Corresponding author

International Journal of Developmental Biology, 53(8-10) :1317—27, 2009. FREE FULL TEXT

PubMed Abstract Full Text PDF

The diploid genome sequence of an individual human

S. Levy , G. Sutton, P.C. Ng, L. Feuk, A.L. Halpern, B.P. Walenz, N. Axelrod, J. Huang, E.F. Kirkness, G. Denisov, Y. Lin, J.R. MacDonald, A.W. Pang, M. Shago, T.B. Stockwell, A. Tsiamouri, V. Bafna, V. Bansal, S.A. Kravitz, D.A. Busam, K.Y. Beeson, T.C. McIntosh, K.A. Remington, J.F. Abril, J. Gill, J. Borman, Y.H. Rogers, M.E. Frazier, S.W. Scherer, R.L. Strausberg, J.C. Venter

PLoS Biology, 5(10) :e254, 2007. OPEN ACCESS

PubMed Full Text PDF POSTER_WEB POSTER_PDF

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium; E. Birney , J.A. Stamatoyannopoulos , A. Dutta , R. Guigó , T.R. Gingeras , E.H. Margulies , Z. Weng , M. Snyder , E.T. Dermitzakis , R.E. Thurman, et al (including J.F. Abril, 81 of 313)

Corresponding authors

Nature, 447(7146) :799-816, 2007. FREE FULL TEXT

PubMed Abstract Full Text PDF

EGASP: The human ENCODE GENOME ANNOTATION ASSESSMENT PROJECT.

R. Guigó , P. Flicek , J.F. Abril , A. Reymond, J. Lagarde, F. Denoeud, S. Antonarakis, M. Ashburner, V.B. Bajic, E. Birney, R. Castelo, E. Eyras, C. Ucla, T.R. Gingeras, J. Harrow, T. Hubbard, S.E. Lewis, M.G. Reese

Contributed equally, Corresponding authors

Genome Biology, 7(suppl.1) :s2.1-s2.31, 2006. OPEN ACCESS

PubMed Abstract Full Text PDF EGASP

2001-2005

Editorial: ECCB/JBI 2005.

R. Guigó, F. Morán, A. Valencia, J.F. Abril

Bioinformatics, 21(suppl.2) :ii1–ii2, 2005. FREE FULL TEXT

Full Text PDF Proceedings

Comparison of splice sites in mammals and chicken.

J.F. Abril, R. Castelo, R. Guigó

Genome Research, 15(1) :111-119, 2005. FREE FULL TEXT

PubMed Abstract Full Text PDF

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

International Chicken Genome Sequencing Consortium; L.W. Hillier, W. Miller, E. Birney, W. Warren, R.C. Hardison, C.P. Ponting, P. Bork, D.W. Burt, M.A. Groenen, M.E. Delany, J.B. Dodgson, A.T. Chinwalla, P.F. Cliften, S.W. Clifton, et al (including J.F. Abril, 173 of 184).

Nature, 432(7018) :695–716, 2004. FREE FULL TEXT

PubMed Abstract Full Text PDF

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Rat Genome Sequencing Project Consortium; R.A. Gibbs , G.M. Weinstock, M.L. Metzker, D.M. Muzny, E.J. Sodergren, S. Scherer, G. Scott, D. Steffen, K.C. Worley, P.E. Burch, G. Okwuonu, S. Hines, L. Lewis, C. DeRamo, O. Delgado, et al (including J.F. Abril, 125 of 230).

Nature, 428(6982) :493–521, 2004. FREE FULL TEXT

PubMed Abstract Full Text PDF

gff2aplot: plotting sequence comparisons.

J.F. Abril , R. Guigó, T. Wiehe

Bioinformatics, 19(18) :2477–2479, 2003. FREE FULL TEXT

PubMed Full Text PDF GFF2APLOT

Comparative gene prediction in human and mouse.

G. Parra, P. Agarwal, J.F. Abril, T. Wiehe, J.W. Fickett, R. Guigó

Genome Research, 13(1) :108-117, 2003. FREE FULL TEXT

PubMed Abstract Full Text PDF

Initial sequencing and comparative analysis of the mouse genome.

Mouse Genome Sequencing Consortium; R.H. Waterston , K. Lindblad-Toh , E. Birney, J. Rogers, J.F. Abril, P. Agarwal, R. Agarwala, R. Ainscough, M. Alexandersson, P. An, S.E. Antonarakis, J. Attwood, R. Baertsch, J. Bailey, K. Barlow, S. Beck, E. Berry, B. Birren, T. Bloom, P. Bork, M. Botcherby, N. Bray, M.R. Brent, et al

Corresponding authors (including E.S. Lander)

Nature, 420(6915) :520–562, 2002. FREE FULL TEXT

PubMed Abstract Full Text PDF

The genome sequence of the malaria mosquito Anopheles gambiae.

R.A. Holt , G.M. Subramanian, A. Halpern, G.G. Sutton, R. Charlab, D.R. Nusskern, P. Wincker, A.G. Clark, J.M.C. Ribeiro, R. Wides, S.L. Salzberg, B. Loftus, M. Yandell, W.H. Majoros, D.B. Rusch, Z. Lai, C.L. Kraft, J.F. Abril, et al

Science, 298(5591) :129-149, 2002. FREE FULL TEXT

PubMed Full Text PDF

Sequence and analysis of chromosome 2 of Dictyostelium discoideum.

G. Glöckner , L. Eichinger , K. Szafranski, J.A. Pachebat, A.T. Bankier, P.H. Dear, R. Lehmann, C. Baumgart, G. Parra, J.F. Abril, R. Guigó, K. Kumpf, B. Tunggal, E. Cox, M.A. Quail, M. Platzer, A. Rosenthal, A.A. Noegel , et al; Dictyostelium Genome Sequencing Consortium

Corresponding authors

Nature, 418(6893) :79-85, 2002.

PubMed Abstract Full Text

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes.

R. Guigo , E.T. Dermitzakis , P. Agarwal, C.P. Ponting, G. Parra, A. Reymond, J.F. Abril, E. Keibler, R. Lyle, C. Ucla, S.E. Antonarakis, M.R. Brent

Contributed equally

Proc Natl Acad Sci U S A (PNAS), 100(3) :1140-1145, 2002. FREE FULL TEXT

PubMed Abstract Full Text PDF

The sequence of the human genome.

J.C. Venter , M.D. Adams, E.W. Myers, P.W. Li, R.J. Mural, G.G. Sutton, H.O. Smith, M. Yandell, C.A. Evans, R.A. Holt, J.D. Gocayne, P. Amanatides, R.M. Ballew, D.H. Huson, J.R. Wortman, et al (including J.F. Abril, 191 of 274)

Science, 291(5507) :1304-1351, 2001. FREE FULL TEXT

PubMed Full Text PDF

Until 2000

Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene.

T.M. Thomson , J.J. Lozano , N. Loukili , R. Carrió, F. Serras, B. Cormand, M. Valeri, V.M. Díaz, J.F. Abril, M. Burset, J. Merino, A. Macaya, M. Corominas, R. Guigó

Contributed equally

Genome Research, 10(11) :1743-1756, 2000. FREE FULL TEXT

PubMed Abstract Full Text PDF

An assessment of gene prediction accuracy in large DNA sequences.

R. Guigó , P. Agarwal, J.F. Abril, M. Burset, J.W. Fickett

Genome Research, 10(10) :1631-1642, 2000. FREE FULL TEXT

PubMed Abstract Full Text PDF

gff2ps: visualizing genomic annotations.

J.F. Abril , R. Guigó

Bioinformatics, 16(8) :743–744, 2000. FREE FULL TEXT

PubMed Abstract Full Text PDF GFF2PS

Genome annotation assessment in Drosophila melanogaster.

M.G. Reese , G. Hartzell, N.L. Harris, U. Ohler, J.F. Abril, S.E. Lewis

Genome Research, 10(4) :483-501, 2000. FREE FULL TEXT

PubMed Abstract Full Text PDF

The genome sequence of Drosophila melanogaster.

M.D. Adams , S.E. Celniker, R.A. Holt, C.A. Evans, J.D. Gocayne, P.G. Amanatides, S.E. Scherer, P.W. Li, R.A. Hoskins, R.F. Galle, R.A. George, S.E. Lewis, S. Richards, M. Ashburner, S.N. Henderson, et al (including Abril J.F., 32 of 195).

Science, 287(5461) :2185-2195, 2000. FREE FULL TEXT

PubMed Abstract Full Text PDF

Other Publications

Book Chapters

Genome Annotation

J.F. Abril, S. Castellano

Book chapter, pages 195–209.
In: Ranganathan S., Nakai K., Schönbach C., and Gribskov M. (eds)
Encyclopedia of Bioinformatics and Computational Biology, vol 2, 2019.
Elsevier Inc. ISBN: 978-0-12-811432-2

Abstract

Gene-finding related terms and definitions.

E. Blanco, J.F. Abril, R. Guigó

Contributed articles for computational gene-finding terms.
In: Zvelebil M.J. and Hancock J.M. (eds)
Concise Encyclopaedia of Bioinformatics and Computational Biology, 2^nd ed., 2014.
Wiley-Blackwell. ISBN: 978-0-470-97871-9

La regeneració i l’homeòstasi en les planàries, un model clàssic de biologia del desenvolupament.
‘’Regeneration and homeostasis in the planarians, a classic model of developmental biology’.’

F. Cebrià, T. Adell, J.F. Abril, E. Saló

Book chapter, pages 93-106.
In: Corominas M. and Valls M. (eds)
Organismes model en Biologia, vol 62, 2011.
Treballs de la Societat Catalana de Biologia. ISSN: 0212-3037

PDF

Computational gene annotation in new genome assemblies using GeneID

E. Blanco, J.F. Abril

Book chapter, pages 243—261.
In: Posada D. (ed)
Bioinformatics for DNA Sequence Analysis.
Methods in Molecular Biology (Methods and Protocols), vol 537, 2009.
Humana Press. ISBN: 978-1-58829-910-9

PubMed Abstract

Sequence Similarity Based Gene Prediction.

R. Guigó, M. Burset, P. Agarwal, J.F. Abril, R.F. Smith, J.W. Fickett

Book chapter 8, pages 95-105.
In: Suhai S. (ed).
Genomics and Proteomics: Functional and Computational Aspects, 31 July 2000.
Kluwer Academic/Plenum Publishing Press, New York. ISBN: 0-306-46312-1

PhD Theses

Computational methods for the identification of emergent viruses analyzed by high-throughput sequencing in water and food.
Mètodes computacionals per a la identificació de virus emergents analitzats per seqüenciació en massa en aigua i aliments.

Natàlia Timoneda

PhD Thesis, Universitat de Barcelona, July 27th, 2017.
Codirected by J.F. Abril and R. Girones.

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Characterizing Neoblasts as Stem Cell Model
Caracterización del Neoblasto como Modelo de Célula Madre

Gustavo Rodriguez-Esteban

PhD Thesis, Universitat de Barcelona, February 4th, 2016.
Codirected by J.F. Abril and E. Saló.

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Comparative Analysis of Eukaryotic Gene Sequence Features

Josep F. Abril

PhD Thesis, Universitat Pompeu Fabra, May 17th, 2005.
Directed by R. Guigó

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