SiNoPsis
v1.0
About
Tutorial
1. Genomic Locus
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2. Master SNP
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3. Cell Lines
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Chromatin State Track
ALL
A549
AG04449
AG04450
AG09309
AG09319
AG10803
AoAF
BE2 C
BJ
Breast vHMEC
Caco-2
CD14 Primary Cells
CD19 Primary Cells
CD20+ RO01778
CD3 Primary Cells
CD4 Primary Cells
CD56 Primary Cells
CD8 Primary Cells
DND-41
Fetal Adrenal Gland
Fetal Brain
Fetal Heart
Fetal Intestine Large
Fetal Intestine Small
Fetal Kidney
Fetal Lung
Fetal Muscle Leg
Fetal Muscle Trunk
Fetal Placenta
Fetal Stomach
Fetal Thymus
Gastric
GM06990
GM12864
GM12865
GM12878
H1 BMP4 Derived Mesendoderm Cultured Cells
H1 BMP4 Derived Trophoblast Cultured Cells
H1 Derived Mesenchymal Stem Cells
H1 Derived Neuronal Progenitor Cultured Cells
H1ESC
H1-hESC
H7-hESC
HAc
HA-sp
HBMEC
HCFaa
HCF
HCM
HCPEpiC
HCT-116
Heart
HEEpiC
HeLa-S3
HepG2
HFF-Myc
HFF
HL-60
HMEC
HMF
HPAF
HPF
HRE
HRPEpiC
HSMM
HSMMtube
HUVEC
HVMF
IMR90
iPS DF 19 11
Jurkat
K562
LNCaP
MCF-7
Monocytes-CD14+
Monocytes-CD14+ RO01746
NB4
NH-A
NHDF-AD
NHDF-neo
NHEK
NHLF
NT2-D1
Osteobl
Ovary
PANC-1
Pancreas
Penis Foreskin Fibroblast Primary Cells
Penis Foreskin Keratinocyte Primary Cells
Psoas Muscle
RPTEC
SAEC
SKMC
SK-N-MC
SK-N-SH RA
Small Intestine
WERI-Rb-1
WI-38
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Regulation Track
ALL
A549
AG04449
AG04450
AG09309
AG09319
AG10803
AoAF
BE2 C
BJ
Breast vHMEC
Caco-2
CD14 Primary Cells
CD19 Primary Cells
CD20+ RO01778
CD3 Primary Cells
CD4 Primary Cells
CD56 Primary Cells
CD8 Primary Cells
DND-41
Fetal Adrenal Gland
Fetal Brain
Fetal Heart
Fetal Intestine Large
Fetal Intestine Small
Fetal Kidney
Fetal Lung
Fetal Muscle Leg
Fetal Muscle Trunk
Fetal Placenta
Fetal Stomach
Fetal Thymus
Gastric
GM06990
GM12864
GM12865
GM12878
H1 BMP4 Derived Mesendoderm Cultured Cells
H1 BMP4 Derived Trophoblast Cultured Cells
H1 Derived Mesenchymal Stem Cells
H1 Derived Neuronal Progenitor Cultured Cells
H1ESC
H1-hESC
H7-hESC
HAc
HA-sp
HBMEC
HCFaa
HCF
HCM
HCPEpiC
HCT-116
Heart
HEEpiC
HeLa-S3
HepG2
HFF-Myc
HFF
HL-60
HMEC
HMF
HPAF
HPF
HRE
HRPEpiC
HSMM
HSMMtube
HUVEC
HVMF
IMR90
iPS DF 19 11
Jurkat
K562
LNCaP
MCF-7
Monocytes-CD14+
Monocytes-CD14+ RO01746
NB4
NH-A
NHDF-AD
NHDF-neo
NHEK
NHLF
NT2-D1
Osteobl
Ovary
PANC-1
Pancreas
Penis Foreskin Fibroblast Primary Cells
Penis Foreskin Keratinocyte Primary Cells
Psoas Muscle
RPTEC
SAEC
SKMC
SK-N-MC
SK-N-SH RA
Small Intestine
WERI-Rb-1
WI-38
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Histone Marks Track
ALL
A549
AG04449
AG04450
AG09309
AG09319
AG10803
AoAF
BE2 C
BJ
Breast vHMEC
Caco-2
CD14 Primary Cells
CD19 Primary Cells
CD20+ RO01778
CD3 Primary Cells
CD4 Primary Cells
CD56 Primary Cells
CD8 Primary Cells
DND-41
Fetal Adrenal Gland
Fetal Brain
Fetal Heart
Fetal Intestine Large
Fetal Intestine Small
Fetal Kidney
Fetal Lung
Fetal Muscle Leg
Fetal Muscle Trunk
Fetal Placenta
Fetal Stomach
Fetal Thymus
Gastric
GM06990
GM12864
GM12865
GM12878
H1 BMP4 Derived Mesendoderm Cultured Cells
H1 BMP4 Derived Trophoblast Cultured Cells
H1 Derived Mesenchymal Stem Cells
H1 Derived Neuronal Progenitor Cultured Cells
H1ESC
H1-hESC
H7-hESC
HAc
HA-sp
HBMEC
HCFaa
HCF
HCM
HCPEpiC
HCT-116
Heart
HEEpiC
HeLa-S3
HepG2
HFF-Myc
HFF
HL-60
HMEC
HMF
HPAF
HPF
HRE
HRPEpiC
HSMM
HSMMtube
HUVEC
HVMF
IMR90
iPS DF 19 11
Jurkat
K562
LNCaP
MCF-7
Monocytes-CD14+
.
Monocytes-CD14+ RO01746
NB4
NH-A
NHDF-Ad
NHDF-neo
NHEK
NHLF
NT2-D1
Osteobl
Ovary
PANC-1
Pancreas
Penis Foreskin Fibroblast Primary Cells
Penis Foreskin Keratinocyte Primary Cells
Psoas Muscle
RPTEC
SAEC
SKMC
SK-N-MC
SK-N-SH RA
Small Intestine
WERI-Rb-1
WI-38
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4. Variation
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eQTL tissue
ALL
Adipose Subcutaneous (ASA)
Adipose Visceral Omentum (AVOA)
Adrenal Gland (AGA)
Artery Aorta (AAA)
Artery Coronary (ACA)
Artery Tibial (ATA)
Brain Anterior cingulate cortex BA24 (BAccBA)
Brain Caudate basal ganglia (BCbgA)
Brain Cerebellar Hemisphere (BCHA)
Brain Cerebellum (BCA)
Brain Cortex (BCA)
Brain Frontal Cortex BA9 (BFCBA)
Brain Hippocampus (BHA)
Brain Hypothalamus (BHA)
Brain Nucleus accumbens basal ganglia (BNabgA)
Brain Putamen basal ganglia (BPbgA)
Breast Mammary Tissue (BMTA)
Cells EBV-transformed lymphocytes (CElA)
Cells Transformed fibroblasts (CTfA)
Colon Sigmoid (CSA)
Colon Transverse (CTA)
Esophagus Gastroesophageal Junction (EGJA)
Esophagus Mucosa (EMA)
Esophagus Muscularis (EMA)
Heart Atrial Appendage (HAAA)
Heart Left Ventricle (HLVA)
Liver (LA)
Lung (LA)
Muscle Skeletal (MSA)
Nerve Tibial (NTA)
Ovary (OA)
Pancreas (PA)
Pituitary (PA)
Prostate (PA)
Skin Not Sun Exposed Suprapubic (SNSESA)
Skin Sun Exposed Lower leg (SSELlA)
Small Intestine Terminal Ileum (SITIA)
Spleen (SA)
Stomach (SA)
Testis (TA)
Thyroid (TA)
Uterus (UA)
Vagina (VA)
Whole Blood (WBA)
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Population
ALL
EUR
AFR
EAS
AMR
SAS
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Population
Choose a population where the SNPs have been described:
EUR - European
AFR - African
EAS - East Asian
AMR - Ad Mixed American
SAS - South Asian
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