Whole Genome Posters
{DIVE(style="float:none; text-align:justify; padding: 5px 40px;")}Several whole-genome posters were made with gff2ps on the early genomic era. You can still enjoy them from the PostScript and/or PDF links provided on this page. {DIVE}
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We were pleased to participate on the #CRGCafe, a divulgative informal talk about the publication of the human genome 20 years ago:
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<small style="font-size: 9px;">PLoS Biology cover 5(10) 2007</small>{DIVE}
gff2ps achieved another genome landmark to visualize the annotation of the first published human diploid genome, included as Poster S1 of "The Diploid Genome Sequence of J. Craig Venter" (Levy et al., PLoS Biology, 5(10):e254, 2007). Further info can be retrieved at the J. Craig Venter Institute (JCVI). {DIVE}
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A printable version of this figure (±107x155cm) is also available from the following links:
- 9.7MB gzipped PostScript file,
- 130.5MB gzipped PDF file, or
- 16.4MB 600dpi PNG file.
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<small style="font-size: 9px;">Science cover 318(5858) 2007</small>{DIVE}
Chromosome 1 gff2ps plot was also stamped on T-shirts, an initiative promoted by the journal Science and the American Association for the Advancement of Science (AAAS), which ended up into the cover of the Science Special Issue for the Breakthrough of the Year on "Human Genetic Variation".{DIVE}
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<small style="font-size: 9px;">Science cover 291(5507) 2002</small>{DIVE}
The malaria mosquito genome annotation was processed with gff2ps to be ploted over its five chromosome arms (2L, 2R, 3L, 3R and X). Those annotations were summarized into a two-sided five-pages foldout included as Figure 1 of "The Genome Sequence of the Malaria Mosquito Anopheles gambiae" (Holt et al., Science, 298(5591):129-149, 2002). Both foldout sides can be downloaded as PDF files from Science web site at the "Annotation of the Anopheles gambiae genome sequence" poster page.
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You can also download a single-page one-sided printable version of this figure (±184x107cm) from the following links:
- 1.5MB gzipped PostScript file,
- 4.9MB gzipped PDF file, or
- 7.5MB 600dpi PNG file.
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<small style="font-size: 9px;">Science cover 291(5507) 2001</small>{DIVE}
We have drawn the map of the Human Genome with gff2ps. 22 autosomic, X and Y chromosomes were displayed in a big poster appearing as Figure 1 of "The Sequence of the Human Genome" (Venter et al., Science, 291(5507):1304-1351, 2001). The single chromosome pictures can be accessed from here to visualize the web version of the "Annotation of the Celera Human Genome Assembly" poster.
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A printable version of this figure (±107x155cm) is also available from the following links:
- 2.7MB gzipped PostScript file,
- 16.7MB gzipped PDF file, or
- 8.9MB 600dpi PNG file.
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<small style="font-size: 9px;">Science cover 287(5461) 2000</small>{DIVE}
gff2ps was used to obtain the plots for each chromosome arm of Drosophila melanogaster (X, 2L, 2R, 3L, 3R and 4) appearing in Figure 4 "Coding content of the fly genome", included as a two-sided five-pages foldout in the manuscript "The Genome Sequence of Drosophila melanogaster" (Adams et al., Science, 287(5461):2185-2195, 2000).
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A single-page one-sided printable version of this figure (±100x55cm) is available from the following links:
- 1.1MB gzipped PostScript file,
- 2.1MB gzipped PDF file, or
- 1.8MB 600dpi PNG file.
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<small style="font-size: 9px;">Genome Research cover 10(4)</small>{DIVE}
We have participated on the community wide Genome Annotation Assessment Project (GASP). gff2ps generated the poster summarizing all the submitted gene-predictions of each participating group, made over the 2.9Mbp genomic region of the Adh locus. All those results were analyzed in the manuscript "Genome Annotation Assessment in Drosophila melanogaster" (Reese et al., Genome Research, 10(4):483-501, 2000).
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You can also download a printable version of this figure (±181x107cm) from the following links:
- 461.2kB gzipped PostScript file,
- 3.0MB gzipped PDF file, or
- 5.7MB 600dpi PNG file.
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Human Genome by Chromosome
{DIVE(style="float:none; text-align:justify; padding: 5px 40px;")}The following table contains the plots of the human genome split by chromosomes. Each chromosome was drawn as a single long track and is available as separate PostScript and PDF files. The annotation datasets were taken from the human genome assembly version hg17 build35 (2006) available from the UCSC Genome browser downloads site.{DIVE}
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ZIPPED PDF/PS FILES by CHROMOSOME | ||||||||||||||
| chr1 | pdf / ps | chr6 | pdf / ps | chr11 | pdf / ps | chr16 | pdf / ps | chr21 | pdf / ps | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2 | pdf / ps | chr7 | pdf / ps | chr12 | pdf / ps | chr17 | pdf / ps | chr22 | pdf / ps | |||||
| chr3 | pdf / ps | chr8 | pdf / ps | chr13 | pdf / ps | chr18 | pdf / ps | chrX | pdf / ps | |||||
| chr4 | pdf / ps | chr9 | pdf / ps | chr14 | pdf / ps | chr19 | pdf / ps | chrY | pdf / ps | |||||
| chr5 | pdf / ps | chr10 | pdf / ps | chr15 | pdf / ps | chr20 | pdf / ps | chrM | pdf / ps | |||||
LEGEND PDF/PS FILES | ||
| Graphical Key | pdf / ps [Final, 60x15cm] | |
|---|---|---|
| Text Legend | pdf / ps [Final, A3 paper] | |
| Complete Legend | pdf / ps [Final, 60x30cm] | |
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