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Other Publications


PhD Theses
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Computational methods for the identification of emergent viruses analyzed by high-throughput sequencing in water and food.
Mètodes computacionals per a la identificació de virus emergents analitzats per seqüenciació en massa en aigua i aliments.
N. Timoneda
PhD Thesis, Universitat de Barcelona, July 27th, 2017.
Codirected by J.F. Abril and R. Girones.
Characterizing Neoblasts as Stem Cell Model
Caracterización del Neoblasto como Modelo de Célula Madre
G. Rodriguez-Esteban
PhD Thesis, Universitat de Barcelona, February 4th, 2016.
Codirected by J.F. Abril and E. Saló.
Comparative Analysis of Eukaryotic Gene Sequence Features
J.F. Abril
PhD Thesis, Universitat Pompeu Fabra, May 17th, 2005.
Directed by R. Guigó

Master Theses

Analysis of a New RPGeNet Dataset
R. Arenas-Galnares
MSc in Genetics and Genomics, Universitat de Barcelona, September 7th, 2018.
Xarxes d’interacció derivades de l’anàlisi automàtica de literatura: gens implicats en càncer colorectal familiar
S. Peret-Horrach
MSc in Genetics and Genomics, Universitat de Barcelona, September 1st, 2017.
PlanNET: Homology-based predicted interactome for multiple planarian transcriptomes
S. Castillo-Lara
MSc in Bioinformatics for Health Sciences, Universitat Pompeu Fabra, July 17th, 2017.
K-mer based reduction data approach to improve de-novo transcriptome assembly of Schmidtea mediterranea
J. González
MSc in Bioinformatics for Genomics & Drug Design, Universitat Autònoma de Barcelona, September 21st, 2016.
Charting the molecular network of the causative genes for retinal dystrophies
D. Boloc
MSc in Biomedicine, Universitat de Barcelona, September, 2014.
Prokaryote genome characterization based on k-mers distribution
M. Alcaraz
MSc in Bioinformatics for Health Sciences, Universitat Pompeu Fabra, September, 2014.
Mapping planarian transcriptome expression levels on metabolic pathways
B. Cadafalch
MSc in Bioinformatics for Genomics & Drug Design, Universitat Autònoma de Barcelona, September, 2013.
Searching for new transcription regulatory motifs in Retinitis pigmentosa related genes
M. de Castro-Miró
MSc in Bioinformatics for Health Sciences, Universitat Pompeu Fabra, September, 2011.
Improving planarian genome annotation from novel EST sequences
J. Gómez-Álvarez
MSc in Genetics and Genomics, Universitat de Barcelona, September, 2010.
Outlining snRNA sequences in the human genome
N. Nabau
MSc in Bioinformatics for Health Sciences, Universitat Pompeu Fabra, July, 2010.
EXOBLAMMER: Combining searches by BLAST, HMMER and EXONERATE
N. Timoneda
MSc in Genetics and Genomics, Universitat de Barcelona, September, 2010.

Undergraduate Theses

A new look to splice sites signals: re-modeling models
T.M. Herrero-Montalvillo
BSc in Biochemistry, Universitat de Barcelona, September, 2018.
La Part del Tot: Anàlisi de K-mers en seqüències víriques
S. Peret-Horrach
BSc in Biomedical Sciences, Universitat de Lleida, September, 2016.
Flushing planarian transcriptome dynamics into systems biology networks
S. Castillo-Lara
BSc in Biology, Universitat de Barcelona, September, 2015.


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