Databases available for Starfish BLAST

Nucleotide sequence databases

Starfish T1 Contigs
Sequences of the assembled contigs. Starfish T1 Raw Reads
Sequences of the raw reads from the 454 sequencing protocol.

Protein sequence databases

6-frame ORF Translation for Starfish T1 Contigs
Contig sequences were translated into the 6 reading frames to get the ORFs amino acid sequences for this database. Stop codons symbols "*", were replaced by lowercase "x" to avoid running issues with BLAST. However, uppercase "X", correspond to incomplete codons (for instance, those having one or more "N" or those at the end of the sequence missing one or two nucleotides).