Databases available for Starfish BLAST
Nucleotide sequence databases
Starfish T1 Contigs
- Sequences of the assembled contigs.
Starfish T1 Raw Reads
- Sequences of the raw reads from the 454 sequencing protocol.
Protein sequence databases
6-frame ORF Translation for Starfish T1 Contigs
- Contig sequences were translated into the 6 reading frames to get the ORFs amino acid sequences for this database. Stop codons symbols "*", were replaced by lowercase "x" to avoid running issues with BLAST. However, uppercase "X", correspond to incomplete codons (for instance, those having one or more "N" or those at the end of the sequence missing one or two nucleotides).