Databases available for
Smed454 contigs BLAST

BLAST databases were generated for the Smed454 transcript assemblies which are described below.

Nucleotide sequence databases

Consensus planarian 90e

MIRA asembled contigs/singletons using 90 percent of similarity (192,633 seqs), where the raw 454 reads initial set also included previous old cleaned UniGene ESTs.

Consensus planarian 90

MIRA asembled contigs/singletons using 90 percent of similarity (190,098 seqs).

Consensus planarian 98

MIRA asembled contigs/singletons using 98 percent of similarity (189,674 seqs).

Protein sequence databases

Consensus planarian 90e (aa)

"Consensus planarian 90e" contigs/singletons nucleotide sequences end-to-end translated into all six reading frames (1,140,828 seqs).

Consensus planarian 90 (aa)

"Consensus planarian 90" contigs/singletons nucleotide sequences end-to-end translated into all six reading frames (1,140,588 seqs).

Consensus planarian 98 (aa)

"Consensus planarian 98" contigs/singletons nucleotide sequences end-to-end translated into all six reading frames (1,138,044 seqs).